Software
A large number of programs and web-services are being developed in the laboratory "Computer Technologies" for research purposes. Only several of them are listed below.
Research are conducted in one of four directions — Bioinformatics, Programming technologies, Machine Learning or Evolutionary Computations.
Bioinformatics software:
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Genome assembly:
- ITMO Genome Assembler — is a tool for de novo assembly of small and middle-sized genomes from reads, produced by Illumina/Solexa, Ion Torrent or Sanger sequencers.
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Shotgun metagenomic data analysis:
- Metafast — is a tool for fast graph-based reference-free comparison of shotgun metagenomic data.
- MetaCherchant — is a tool for analyzing genomic context of antibiotic resistance genes in gut microbiota.
- Phantasus
- GAM
- gatom